The methods I use for clearing up corpses are pretty tiring,not quite as bad as killing AoD with a combat knife (outside of AoMC) perhaps, but certainly time-consuming. The first few levels are actually the hardest to 100%, because Doomguy starts off very sluggish and has the worst weapons, whereas respawn increases at the same rate on every level.
I've only just begun experimenting with giftdropping myself, so it was annoying to lose my medkits, but there's still Green Armor on level 1 of AoI. It should be enough to get all of the formers onto doorways, but getting to the armor to begin with is a lot more difficult than in most other games.
(that reminds me, if you can get a "damage all monsters" lever on Level 1-2 of an AoPc, that can put you off to a great start, as you can gain an extra 1-2 levels like that).
In this case, for level 2 I had the gift of a "flood all water" lever, which made it pretty redundant as I could just kill everything and nothing would respawn. Level 2 is usually one of the most boring/longest levels to 100%, there's a few things:
Find a chaingun (if you can use one)
Save barrels for (dead) Imps
Get formers onto doors or each other. Shoot them (with a shotgun) onto dead Imps first if there's no barrels around. You may not want to kill every former on a door just in case you need them to get rid of Imps (or worse things later).
Use a shotgun where necessary to "move" dead enemies around or on top of each other
If you can deal damage quickly enough, a "pet" demon, can sit/die on annoying Imp corpses for you. Obviously this is easier on AoMC, since demons can take quite a while to kill early on, even with a Chaingun. You might want to use a former human instead, they have a ranged attack but are much easier to kill, and a single pistol shot that strikes them will not kill them but draw their attention.
Water is very useful, especially in the centre. All you need is a shotgun and even Imps are no problem.
If you get a vault with Cacodemons, that's either lucky or unlucky depending on how you look at it.
Giftdrop liberally, and take advantage of the AI's nuances.
Hell Arena:
Clear it as quickly as possible, with a Chaingun. Pay attention to corpses that get up, even if they're out of sight, you will see them, and since they won't move for 4 seconds, they should be a sitting duck (not so much if it's a Cacodemon). Once you finish the 3rd wave enemies will no longer respawn. If you can't use a Chaingun then you need to be very good at corpse stacking and killing demons. Grab the Rocket Launcher and all of the Rockets at the end.
Level 3:
Hellknights, shouldn't be a problem if you can get them weak enough and kill them on a door, otherwise kill something weaker on top of their corpse. Cacodemons and Imps are still a problem, if you don't have the Rocket Launcher yet, or want to save the rockets, it can take a while to clear. Same as level 2, but prioritise barrels for Cacodemons.
Level 4+:
You should definitely have the Rocket Launcher now. It only gets easier from here on out. Also, once acid and napalm barrels appear, if there isn't already acid/lava in the middle of the map, if you can clear the middle and destroy a barrel there, it's only a matter of time before all of the corpses end up inside the acid/lava (as long as you saved a weapon with knockback), especially as most enemies gravitate towards the centre of the map. Note that, even the Combat Knife can induce knockback in enemies, and isn't destroyed by barrel explosions.
Acid/lava is very useful in general, enemies frequently get "stuck" on it and after that it's very easy to push them onto it. It's possible to clear all levels from here out with the environment, corpse stacking and barrels, but if you get tired or if it's a mean group of enemies, the rocket launcher usually makes short work of corpses. If it's too far from any walls, you can even rocket jump to gib corpses.
Probably the quickest way (not the way I've been doing it though) would be to just use rockets from here on out and any nearby barrels. The BFG can gib corpses too (but destroys a lot of items) if you're in a hurry. Stay stocked up on Rockets, and once you run into Mancubi & Revenants you gain the ability to "farm" Rockets.
I still don't have a failsafe/quick method for clearing level 2 because of the Imps, and level 3 because of the Cacodemons and arguably hard to kill Hellknights (depending on configurations) so it might be best to stack formers on top of them. If looking for a quick way to dispose of corpses, I recommend Rockets, which means completing Hell's Arena to get them early and guaranteed.
Hm, that's all I can think of right now, I'm not good at writing guides. (also I think all/most of this is already mentioned in different formats in guides, so it's probably not very helpful. It takes a very long time to clear levels sometimes, so I haven't developed a "fast" method yet.)
Oh one thing, in my experience "Demolition Ammo" doesn't gib corpses. Longinus Spear/Scythe (berserked) will gib smaller monsters on attack, but I haven't seen anything else do that yet.
+ another thing, you can wait around and kill Imps on doors too, as long it's safe to do so and you don't mind that the respawn rate will be increasing the whole time in general (this only works in certain places, thanks to the AI. The closer to the centre you can setup in a door, the better). I guess that's kinda obvious to mention, since you can do it with Formers (albeit much easier thanks to giftdropping), but I did that sometimes when facing large groups of Imps.
In terms of general strategy, I corner shoot and scout a lot, shoot at a lot of different angles, try to find weird angles to "bend" shots around corners and use the trick for shooting through gaps & doors to pull off otherwise impossible shots. I try to minimise the amount of time an active enemy can see me as much as possible, and wherever possible try to kill them from behind cover (as in around corners). Use chainfire to save a bullet here and there for scouting down corridors (since it uses less ammo). Ammo isn't a major problem on N! since you usually have an opportunity to farm it, and Arch Viles only add to the amount of ammo on a map, usually.
final edit: annnnd... I didn't need to write all this after all, sklres already began his YAAM runs on N!